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Update output paths

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This commit is contained in:
drpatelh 2020-08-07 09:32:03 +01:00
parent 268c56c20d
commit 754fad7c8e
1 changed files with 7 additions and 7 deletions
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14
software/fastqc/test/main.nf
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@ -2,7 +2,7 @@
nextflow.enable.dsl = 2
params.outdir = "results/"
params.outdir = "output/"
params.publish_dir_mode = "copy"
params.conda = false
@ -13,11 +13,11 @@ include { FASTQC } from '../main.nf'
*/
workflow test_single_end {
def reads = []
reads = [ [ id:'test', single_end:true ],
def input = []
input = [ [ id:'test', single_end:true ],
[ file('input/test_single_end.fastq.gz', checkIfExists: true) ] ]
FASTQC ( reads, [:] )
FASTQC ( input, [ publish_dir:'test_single_end' ] )
}
/*
@ -25,11 +25,11 @@ workflow test_single_end {
*/
workflow test_paired_end {
def reads = []
reads = [ [ id:'test', single_end:false ],
def input = []
input = [ [ id:'test', single_end:false ],
[ file('input/test_R1.fastq.gz', checkIfExists: true), file('input/test_R2.fastq.gz', checkIfExists: true) ] ]
FASTQC ( reads, [:] )
FASTQC ( input, [ publish_dir:'test_paired_end' ] )
}
workflow {