diff --git a/software/bedtools/complement/main.nf b/software/bedtools/complement/main.nf index 8e99e58b..d9291d3b 100644 --- a/software/bedtools/complement/main.nf +++ b/software/bedtools/complement/main.nf @@ -11,8 +11,7 @@ process BEDTOOLS_COMPLEMENT { if (params.publish_results == "none") null else filename } - //container "docker.pkg.github.com/nf-core/$MODULE" - container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0' + container "docker.pkg.github.com/nf-core/$MODULE" conda "${moduleDir}/environment.yml" diff --git a/software/bedtools/genomecov/main.nf b/software/bedtools/genomecov/main.nf index 9ae6466d..9b7277ef 100644 --- a/software/bedtools/genomecov/main.nf +++ b/software/bedtools/genomecov/main.nf @@ -11,8 +11,7 @@ process BEDTOOLS_GENOMECOV { if (params.publish_results == "none") null else filename } - //container "docker.pkg.github.com/nf-core/$MODULE" - container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0' + container "docker.pkg.github.com/nf-core/$MODULE" conda "${moduleDir}/environment.yml" diff --git a/software/bedtools/intersect/main.nf b/software/bedtools/intersect/main.nf index 8a5ba53b..70bc6e86 100644 --- a/software/bedtools/intersect/main.nf +++ b/software/bedtools/intersect/main.nf @@ -11,8 +11,7 @@ process INTERSECT_BED { if (params.publish_results == "none") null else filename } - //container "docker.pkg.github.com/nf-core/$MODULE" - container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0' + container "docker.pkg.github.com/nf-core/$MODULE" conda "${moduleDir}/environment.yml" diff --git a/software/bedtools/merge/main.nf b/software/bedtools/merge/main.nf index d0b1b712..ff4e0aa1 100644 --- a/software/bedtools/merge/main.nf +++ b/software/bedtools/merge/main.nf @@ -11,8 +11,7 @@ process BEDTOOLS_MERGE { if (params.publish_results == "none") null else filename } - //container "docker.pkg.github.com/nf-core/$MODULE" - container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0' + container "docker.pkg.github.com/nf-core/$MODULE" conda "${moduleDir}/environment.yml" diff --git a/software/bedtools/sort/main.nf b/software/bedtools/sort/main.nf index 28ffdd6b..77b9300f 100644 --- a/software/bedtools/sort/main.nf +++ b/software/bedtools/sort/main.nf @@ -11,8 +11,7 @@ process BEDTOOLS_SORT { if (params.publish_results == "none") null else filename } - //container "docker.pkg.github.com/nf-core/$MODULE" - container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0' + container "docker.pkg.github.com/nf-core/$MODULE" conda "${moduleDir}/environment.yml"