From 7627e656ee34289ff52295d69cfa8ba1e3f6dbbb Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Wed, 24 Feb 2021 09:57:23 +0100 Subject: [PATCH] Add all tests back in --- tests/software/seqkit/split2/test.yml | 168 +++++++++++++------------- 1 file changed, 84 insertions(+), 84 deletions(-) diff --git a/tests/software/seqkit/split2/test.yml b/tests/software/seqkit/split2/test.yml index 57ef323c..1e5a0353 100644 --- a/tests/software/seqkit/split2/test.yml +++ b/tests/software/seqkit/split2/test.yml @@ -12,91 +12,91 @@ md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311 -# - name: seqkit split2 single-end size -# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_size -c tests/config/nextflow.config -# tags: -# - seqkit -# - seqkit_split2 -# - seqkit_split2_single_end -# - size -# files: -# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz -# md5sum: e76ac276819eb862c0a931755a220b50 -# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz -# md5sum: 79eb15ff1aac645308fab188915f9edf -# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz -# md5sum: f01fa62d34012a2e9cc48972dfe8c14c +- name: seqkit split2 single-end size + command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_size -c tests/config/nextflow.config + tags: + - seqkit + - seqkit_split2 + - seqkit_split2_single_end + - size + files: + - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz + md5sum: e76ac276819eb862c0a931755a220b50 + - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz + md5sum: 79eb15ff1aac645308fab188915f9edf + - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz + md5sum: f01fa62d34012a2e9cc48972dfe8c14c -# - name: seqkit split2 single-end part -# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_part -c tests/config/nextflow.config -# tags: -# - seqkit -# - seqkit_split2 -# - seqkit_split2_single_end -# - part -# files: -# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz -# md5sum: c394bc973e1f0f9bda835e4a7610d2e1 -# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz -# md5sum: 152e4470b8caeed1fc1c0326f34aa4e6 -# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz -# md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d +- name: seqkit split2 single-end part + command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_part -c tests/config/nextflow.config + tags: + - seqkit + - seqkit_split2 + - seqkit_split2_single_end + - part + files: + - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz + md5sum: c394bc973e1f0f9bda835e4a7610d2e1 + - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz + md5sum: 152e4470b8caeed1fc1c0326f34aa4e6 + - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz + md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d -# - name: seqkit split2 paired-end length -# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config -# tags: -# - seqkit -# - seqkit_split2 -# - seqkit_split2_paired_end -# - length -# files: -# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz -# md5sum: fb45cfec0d0d37f85abe81a0d299137e -# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz -# md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311 -# - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz -# md5sum: 4e9704a4a0f4bcab4900b6fcd9323d8a -# - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz -# md5sum: da93241d0cfa84d4b806e1e102c16977 +- name: seqkit split2 paired-end length + command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config + tags: + - seqkit + - seqkit_split2 + - seqkit_split2_paired_end + - length + files: + - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz + md5sum: fb45cfec0d0d37f85abe81a0d299137e + - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz + md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311 + - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz + md5sum: 4e9704a4a0f4bcab4900b6fcd9323d8a + - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz + md5sum: da93241d0cfa84d4b806e1e102c16977 -# - name: seqkit split2 paired-end size -# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_size -c tests/config/nextflow.config -# tags: -# - seqkit -# - seqkit_split2 -# - seqkit_split2_paired_end -# - size -# files: -# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz -# md5sum: e76ac276819eb862c0a931755a220b50 -# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz -# md5sum: 79eb15ff1aac645308fab188915f9edf -# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz -# md5sum: f01fa62d34012a2e9cc48972dfe8c14c -# - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz -# md5sum: 357bfa5b981f34d87f682aebcf5e46fe -# - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz -# md5sum: f48f3389d2870f4934139a901e5c4bb2 -# - path: output/seqkit/test.split/SRR396636_R2.part_003.fastq.gz -# md5sum: d161aa05bac2f7d1823da0479949512b +- name: seqkit split2 paired-end size + command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_size -c tests/config/nextflow.config + tags: + - seqkit + - seqkit_split2 + - seqkit_split2_paired_end + - size + files: + - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz + md5sum: e76ac276819eb862c0a931755a220b50 + - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz + md5sum: 79eb15ff1aac645308fab188915f9edf + - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz + md5sum: f01fa62d34012a2e9cc48972dfe8c14c + - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz + md5sum: 357bfa5b981f34d87f682aebcf5e46fe + - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz + md5sum: f48f3389d2870f4934139a901e5c4bb2 + - path: output/seqkit/test.split/SRR396636_R2.part_003.fastq.gz + md5sum: d161aa05bac2f7d1823da0479949512b -# - name: seqkit split2 paired-end part -# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_part -c tests/config/nextflow.config -# tags: -# - seqkit -# - seqkit_split2 -# - seqkit_split2_paired_end -# - part -# files: -# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz -# md5sum: c394bc973e1f0f9bda835e4a7610d2e1 -# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz -# md5sum: 152e4470b8caeed1fc1c0326f34aa4e6 -# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz -# md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d -# - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz -# md5sum: 228aff8f1e56050967476fcad164a4fc -# - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz -# md5sum: 41047f3df10126c0df7f8e9bfd752b83 -# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz -# md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d \ No newline at end of file +- name: seqkit split2 paired-end part + command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_part -c tests/config/nextflow.config + tags: + - seqkit + - seqkit_split2 + - seqkit_split2_paired_end + - part + files: + - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz + md5sum: c394bc973e1f0f9bda835e4a7610d2e1 + - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz + md5sum: 152e4470b8caeed1fc1c0326f34aa4e6 + - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz + md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d + - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz + md5sum: 228aff8f1e56050967476fcad164a4fc + - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz + md5sum: 41047f3df10126c0df7f8e9bfd752b83 + - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz + md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d \ No newline at end of file