From 7630e278f3aa9abe1c1b78bac783cf9db2e66c9d Mon Sep 17 00:00:00 2001
From: "Maxime U. Garcia" <max.u.garcia@gmail.com>
Date: Tue, 19 Apr 2022 16:51:59 +0200
Subject: [PATCH] update gatk4 yml for spark (#1538)

---
 tests/config/pytest_modules.yml | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
index cd4913cf..bbd47fe5 100644
--- a/tests/config/pytest_modules.yml
+++ b/tests/config/pytest_modules.yml
@@ -659,6 +659,10 @@ gatk4/applybqsr:
   - modules/gatk4/applybqsr/**
   - tests/modules/gatk4/applybqsr/**
 
+gatk4/applybqsrspark:
+  - modules/gatk4/applybqsrspark/**
+  - tests/modules/gatk4/applybqsrspark/**
+
 gatk4/applyvqsr:
   - modules/gatk4/applyvqsr/**
   - tests/modules/gatk4/applyvqsr/**
@@ -667,6 +671,10 @@ gatk4/baserecalibrator:
   - modules/gatk4/baserecalibrator/**
   - tests/modules/gatk4/baserecalibrator/**
 
+gatk4/baserecalibratorspark:
+  - modules/gatk4/baserecalibratorspark/**
+  - tests/modules/gatk4/baserecalibratorspark/**
+
 gatk4/bedtointervallist:
   - modules/gatk4/bedtointervallist/**
   - tests/modules/gatk4/bedtointervallist/**
@@ -743,6 +751,10 @@ gatk4/markduplicates:
   - modules/gatk4/markduplicates/**
   - tests/modules/gatk4/markduplicates/**
 
+gatk4/markduplicatesspark:
+  - modules/gatk4/markduplicatesspark/**
+  - tests/modules/gatk4/markduplicatesspark/**
+
 gatk4/mergebamalignment:
   - modules/gatk4/mergebamalignment/**
   - tests/modules/gatk4/mergebamalignment/**