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add threads to calibratedragstrmodel

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This commit is contained in:
Nicolas Vannieuwkerke 2022-06-07 12:11:18 +02:00
parent af890b1417
commit 771425e7a0
2 changed files with 7 additions and 6 deletions
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1
modules/gatk4/calibratedragstrmodel/main.nf
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@ -38,6 +38,7 @@ process GATK4_CALIBRATEDRAGSTRMODEL {
--output ${prefix}.txt \\
--reference $fasta \\
--str-table-path $strtablefile \\
--threads $task.cpus \\
$intervals_command \\
--tmp-dir . \\
$args

12
tests/modules/gatk4/calibratedragstrmodel/test.yml
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@ -1,26 +1,26 @@
- name: gatk4 calibratedragstrmodel test_gatk4_calibratedragstrmodel_bam
command: nextflow run ./tests/modules/gatk4/calibratedragstrmodel -entry test_gatk4_calibratedragstrmodel_bam -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/calibratedragstrmodel/nextflow.config
tags:
- gatk4/calibratedragstrmodel
- gatk4
- gatk4/calibratedragstrmodel
files:
- path: output/gatk4/test.txt
md5sum: 0a1a1583b157fa2251dd931ed165da4f
md5sum: e16fa32906c74bb18b93e98a86718ff1
- name: gatk4 calibratedragstrmodel test_gatk4_calibratedragstrmodel_cram
command: nextflow run ./tests/modules/gatk4/calibratedragstrmodel -entry test_gatk4_calibratedragstrmodel_cram -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/calibratedragstrmodel/nextflow.config
tags:
- gatk4/calibratedragstrmodel
- gatk4
- gatk4/calibratedragstrmodel
files:
- path: output/gatk4/test.txt
md5sum: 1aa7ab38023f724877b3323c5e6b9a4e
md5sum: 81c7bf338886cb4d5c2cc07fc56afe44
- name: gatk4 calibratedragstrmodel test_gatk4_calibratedragstrmodel_beds
command: nextflow run ./tests/modules/gatk4/calibratedragstrmodel -entry test_gatk4_calibratedragstrmodel_beds -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/calibratedragstrmodel/nextflow.config
tags:
- gatk4/calibratedragstrmodel
- gatk4
- gatk4/calibratedragstrmodel
files:
- path: output/gatk4/test.txt
md5sum: def8baccad7bd59006f08fcb0a6721bf
md5sum: cb6a9acdee042302b54fd1f59b5f54ee