millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-21 10:48:18 +00:00
Code Issues Releases Packages Activity

Fix bakta: variable in main.nf (#2050)

Browse source 
Fix variable prodigal_tf
This commit is contained in:
Jasmin F 2022-09-13 13:03:21 +02:00 committed by GitHub
parent 5587389874
commit 77a6dd3f61
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
modules/bakta/main.nf
View file

@ -33,7 +33,7 @@ process BAKTA {
def args = task.ext.args ?: ''
prefix = task.ext.prefix ?: "${meta.id}"
def proteins_opt = proteins ? "--proteins ${proteins[0]}" : ""
def prodigal_opt = prodigal_tf ? "--prodigal-tf ${prodigal_tf[0]}" : ""
def prodigal_tf = prodigal_tf ? "--prodigal-tf ${prodigal_tf[0]}" : ""
"""
bakta \\
$args \\