Fix bakta: variable in main.nf (#2050)

Fix variable prodigal_tf
2 years ago · 77a6dd3f61
parent 5587389874
commit 77a6dd3f61
1 changed files with 1 additions and 1 deletions
--- a/modules/bakta/main.nf
+++ b/modules/bakta/main.nf
@ -33,7 +33,7 @@ process BAKTA {
    def args = task.ext.args   ?: ''
    prefix   = task.ext.prefix ?: "${meta.id}"
    def proteins_opt = proteins ? "--proteins ${proteins[0]}" : ""
-    def prodigal_opt = prodigal_tf ? "--prodigal-tf ${prodigal_tf[0]}" : ""
+    def prodigal_tf = prodigal_tf ? "--prodigal-tf ${prodigal_tf[0]}" : ""
    """
    bakta \\
        $args \\