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Fix bakta: variable in main.nf (#2050)

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Fix variable prodigal_tf
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Jasmin F 2022-09-13 13:03:21 +02:00 committed by GitHub
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commit 77a6dd3f61
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modules/bakta/main.nf
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@ -33,7 +33,7 @@ process BAKTA {
def args = task.ext.args ?: '' def args = task.ext.args ?: ''
prefix = task.ext.prefix ?: "${meta.id}" prefix = task.ext.prefix ?: "${meta.id}"
def proteins_opt = proteins ? "--proteins ${proteins[0]}" : "" def proteins_opt = proteins ? "--proteins ${proteins[0]}" : ""
def prodigal_opt = prodigal_tf ? "--prodigal-tf ${prodigal_tf[0]}" : "" def prodigal_tf = prodigal_tf ? "--prodigal-tf ${prodigal_tf[0]}" : ""
""" """
bakta \\ bakta \\
$args \\ $args \\