diff --git a/modules/hmtnote/main.nf b/modules/hmtnote/main.nf index 6dcd27c2..1d56837c 100644 --- a/modules/hmtnote/main.nf +++ b/modules/hmtnote/main.nf @@ -1,20 +1,3 @@ -// TODO nf-core: If in doubt look at other nf-core/modules to see how we are doing things! :) -// https://github.com/nf-core/modules/tree/master/modules -// You can also ask for help via your pull request or on the #modules channel on the nf-core Slack workspace: -// https://nf-co.re/join -// TODO nf-core: A module file SHOULD only define input and output files as command-line parameters. -// All other parameters MUST be provided using the "task.ext" directive, see here: -// https://www.nextflow.io/docs/latest/process.html#ext -// where "task.ext" is a string. -// Any parameters that need to be evaluated in the context of a particular sample -// e.g. single-end/paired-end data MUST also be defined and evaluated appropriately. -// TODO nf-core: Software that can be piped together SHOULD be added to separate module files -// unless there is a run-time, storage advantage in implementing in this way -// e.g. it's ok to have a single module for bwa to output BAM instead of SAM: -// bwa mem | samtools view -B -T ref.fasta -// TODO nf-core: Optional inputs are not currently supported by Nextflow. However, using an empty -// list (`[]`) instealdd of a file can be used to work around this issue. - process HMTNOTE { tag "$meta.id" label 'process_low' @@ -76,7 +59,7 @@ process HMTNOTE { touch ${prefix}_annotated.vcf cat <<-END_VERSIONS > versions.yml "${task.process}": - hmtnote: \$(echo \$(hmtnote --version 2>&1) | sed 's/^.*hmtnote //; s/Using.*\$//' )) + hmtnote: \$(echo \$(hmtnote --version 2>&1) | sed 's/^.*hmtnote, version //; s/Using.*\$//' )) END_VERSIONS """ }