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added an extra test without fasta

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This commit is contained in:
Nicolas Vannieuwkerke 2022-06-09 11:53:16 +02:00
parent a3202e41ec
commit 7947bc662c
2 changed files with 22 additions and 3 deletions
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13
tests/modules/ensemblvep/main.nf
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@ -4,7 +4,7 @@ nextflow.enable.dsl = 2
include { ENSEMBLVEP } from '../../../modules/ensemblvep/main.nf' include { ENSEMBLVEP } from '../../../modules/ensemblvep/main.nf'
workflow test_ensemblvep { workflow test_ensemblvep_fasta {
input = [ input = [
[ id:'test' ], // meta map [ id:'test' ], // meta map
file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true)
@ -14,3 +14,14 @@ workflow test_ensemblvep {
ENSEMBLVEP ( input, "WBcel235", "caenorhabditis_elegans", "104", [], fasta, [] ) ENSEMBLVEP ( input, "WBcel235", "caenorhabditis_elegans", "104", [], fasta, [] )
} }
workflow test_ensemblvep_no_fasta {
input = [
[ id:'test' ], // meta map
file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true)
]
fasta = []
ENSEMBLVEP ( input, "WBcel235", "caenorhabditis_elegans", "104", [], fasta, [] )
}

12
tests/modules/ensemblvep/test.yml
View file

@ -1,5 +1,13 @@
- name: ensemblvep test_ensemblvep - name: ensemblvep test_ensemblvep_fasta
command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
tags:
- ensemblvep
files:
- path: output/ensemblvep/test.ann.vcf
- path: output/ensemblvep/test.summary.html
- name: ensemblvep test_ensemblvep_no_fasta
command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_no_fasta -c ./tests/config/nextflow.config -c ./tests/modules/ensemblvep/nextflow.config
tags: tags:
- ensemblvep - ensemblvep
files: files: