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Update: biobambam/bammarkduplicates2 to v2.0.183 (#1493)

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* bump version, remove md5sums from test

* re-add md5sums
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Matthias De Smet 2022-04-05 11:06:46 +02:00 committed by GitHub
parent 879d42c5e2
commit 797ce3254e
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2 changed files with 4 additions and 6 deletions
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6
modules/biobambam/bammarkduplicates2/main.nf
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@ -2,10 +2,8 @@ process BIOBAMBAM_BAMMARKDUPLICATES2 {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::biobambam=2.0.182" : null) conda (params.enable_conda ? "bioconda::biobambam=2.0.183" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/biobambam:2.0.183--h9f5acd7_1' : 'quay.io/biocontainers/biobambam:2.0.183--h9f5acd7_1'}"
'https://depot.galaxyproject.org/singularity/biobambam:2.0.182--h7d875b9_0':
'quay.io/biocontainers/biobambam:2.0.182--h7d875b9_0' }"
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

4
tests/modules/biobambam/bammarkduplicates2/test.yml
View file

@ -5,8 +5,8 @@
- biobambam - biobambam
files: files:
- path: output/biobambam/test.bam - path: output/biobambam/test.bam
md5sum: 1cf7f957eb20b4ace9f10d0cf0a0649a md5sum: 603edff09029096ddf2bb8a3f12d7aa7
- path: output/biobambam/test.metrics.txt - path: output/biobambam/test.metrics.txt
md5sum: 30d6e7d90bb5df46329d4bc0144ce927 md5sum: 30d6e7d90bb5df46329d4bc0144ce927
- path: output/biobambam/versions.yml - path: output/biobambam/versions.yml
md5sum: 0d6f3137ed4515333d73c779f2c24445 md5sum: dfdf2b084655d124acac0bfb4eda86cc