diff --git a/.github/filters.yml b/.github/filters.yml
index 279eaf50..db826b81 100644
--- a/.github/filters.yml
+++ b/.github/filters.yml
@@ -2,6 +2,30 @@ bandage_image:
   - software/bandage/image/**
   - tests/software/bandage/image/**
 
+bcftools_bgzip:
+  - software/bowtie/bgzip/**
+  - tests/software/bcftools/bgzip**
+
+bcftools_consensus:
+  - software/bowtie/consesus/**
+  - tests/software/bcftools/consesus**
+
+bcftools_filter:
+  - software/bowtie/filter/**
+  - tests/software/bcftools/filter**
+
+bcftools_isec:
+  - software/bowtie/isec/**
+  - tests/software/bcftools/isec**
+
+bcftools_stats:
+  - software/bowtie/stats/**
+  - tests/software/bcftools/stats**
+
+bcftools_tabix:
+  - software/bowtie/tabix/**
+  - tests/software/bcftools/tabix**
+
 bedtools_complement:
   - software/bedtools/complement/**
   - tests/software/bedtools/complement/**