From 7c276d297422641827f60bfa6d33ee20993c4595 Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Tue, 16 Feb 2021 23:01:27 +0000 Subject: [PATCH] Update tests/software/ivar/variants/main.nf --- tests/software/ivar/variants/main.nf | 3 +++ 1 file changed, 3 insertions(+) diff --git a/tests/software/ivar/variants/main.nf b/tests/software/ivar/variants/main.nf index 56984579..07999457 100644 --- a/tests/software/ivar/variants/main.nf +++ b/tests/software/ivar/variants/main.nf @@ -16,6 +16,9 @@ workflow test_ivar_variants_no_gff_no_mpileup { IVAR_VARIANTS ( input, ref, dummy ) } +params.gff = false +params.save_mpileup = true + workflow test_ivar_variants_no_gff_with_mpileup { def ref = file("${launchDir}/tests/data/fasta/sarscov2/MN908947.3.fa", checkIfExists: true) def dummy = file("${launchDir}/tests/data/dummy/dummy_file.txt", checkIfExists: true)