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make prettier
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parent
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1 changed files with 8 additions and 7 deletions
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@ -1,8 +1,9 @@
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- name: snippy run test_snippy_run
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command: nextflow run tests/modules/snippy/run -entry test_snippy_run -c tests/config/nextflow.config -c tests/modules/snippy/run/nextflow.config
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command: |
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nextflow run tests/modules/snippy/run -entry test_snippy_run -c tests/config/nextflow.config -c tests/modules/snippy/run/nextflow.config
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tags:
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- snippy
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- snippy/run
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- snippy
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files:
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- path: output/snippy/test/test.aligned.fa
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md5sum: 47e3390d4167edf1955d162d37aca5e3
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@ -16,21 +17,21 @@
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- path: output/snippy/test/test.csv
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md5sum: 322f942115e5945c2041a88246166703
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- path: output/snippy/test/test.filt.vcf
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contains: ['fileformat', 'freebayes', 'CHROM']
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contains: ["fileformat", "freebayes", "CHROM"]
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- path: output/snippy/test/test.gff
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md5sum: df19e1b84ba6f691d20c72b397c88abf
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- path: output/snippy/test/test.html
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md5sum: 1ccbf0ffcadae1a6b2e11681d24c9938
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- path: output/snippy/test/test.log
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contains: ['snippy', 'consensus', 'subs']
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contains: ["snippy", "consensus", "subs"]
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- path: output/snippy/test/test.raw.vcf
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contains: ['fileformat', 'freebayes', 'CHROM']
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contains: ["fileformat", "freebayes", "CHROM"]
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- path: output/snippy/test/test.tab
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md5sum: beb9bde3bce985e53e8feba9ec5b136e
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- path: output/snippy/test/test.txt
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contains: ['DateTime', 'ReadFiles', 'VariantTotal']
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contains: ["DateTime", "ReadFiles", "VariantTotal"]
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- path: output/snippy/test/test.vcf
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contains: ['fileformat', 'freebayes', 'CHROM']
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contains: ["fileformat", "freebayes", "CHROM"]
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- path: output/snippy/test/test.vcf.gz
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- path: output/snippy/test/test.vcf.gz.csi
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md5sum: bed9fa291c220a1ba04eb2d448932ffc
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