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test(appyter): Add initial tests

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Co-authored-by:  sruthipsuresh <sps180004@utdallas.edu>
This commit is contained in:
Edmund Miller 2021-03-15 14:39:18 -05:00
parent 3db7f0642a
commit 7d8389deea
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3 changed files with 17 additions and 0 deletions
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tests/software/appyter/input.json Normal file
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tests/software/appyter/main.nf Normal file
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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { APPYTER } from '../../../software/appyter/main.nf' addParams( options: [appyter_image: "maayanlab/appyter-example:0.0.3-0.12.2"] )
workflow test_appyter {
def input = []
input = file("${launchDir}/tests/software/appyter/input.json", checkIfExists: true)
APPYTER ( input )
}

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tests/software/appyter/test.yml Normal file
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- name: appyter
command: nextflow run ./tests/software/appyter/ -entry test_appyter -c tests/config/nextflow.config
tags:
- appyter
files:
- path: ./output/appyter/output.ipynb