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test(appyter): Add initial tests
Co-authored-by: sruthipsuresh <sps180004@utdallas.edu>
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tests/software/appyter/input.json
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tests/software/appyter/input.json
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tests/software/appyter/main.nf
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tests/software/appyter/main.nf
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { APPYTER } from '../../../software/appyter/main.nf' addParams( options: [appyter_image: "maayanlab/appyter-example:0.0.3-0.12.2"] )
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workflow test_appyter {
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def input = []
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input = file("${launchDir}/tests/software/appyter/input.json", checkIfExists: true)
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APPYTER ( input )
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}
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tests/software/appyter/test.yml
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tests/software/appyter/test.yml
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- name: appyter
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command: nextflow run ./tests/software/appyter/ -entry test_appyter -c tests/config/nextflow.config
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tags:
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- appyter
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files:
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- path: ./output/appyter/output.ipynb
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