Update subworkflows/nf-core/bam_qc_picard/main.nf

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2 years ago · 7e391c3a3b
parent 343c0ebe20
commit 7e391c3a3b
1 changed files with 1 additions and 1 deletions
--- a/subworkflows/nf-core/bam_qc_picard/main.nf
+++ b/subworkflows/nf-core/bam_qc_picard/main.nf
@ -25,7 +25,7 @@ workflow BAM_QC_PICARD {
        if (!ch_bait_interval) log.error("Bait interval channel is empty")
        if (!ch_target_interval) log.error("Target interval channel is empty")
        PICARD_COLLECTHSMETRICS( ch_bam, ch_fasta, ch_fasta_fai, ch_bait_interval, ch_target_interval )
-        ch_coverage_metrics = PICARD_COLLECTHSMETRICS.out.metrics
+        ch_coverage_metrics = ch_coverage_metrics.mix(PICARD_COLLECTHSMETRICS.out.metrics)
        ch_versions = ch_versions.mix(PICARD_COLLECTHSMETRICS.out.versions.first())
    } else {
        PICARD_COLLECTWGSMETRICS( ch_bam, ch_fasta )