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add error is is provided twice

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Matthias De Smet 2022-05-24 12:25:31 +02:00
parent b5850fd471
commit 7e777c6626
1 changed files with 3 additions and 0 deletions
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modules/mosdepth/main.nf
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@ -31,6 +31,9 @@ process MOSDEPTH {
def prefix = task.ext.prefix ?: "${meta.id}" def prefix = task.ext.prefix ?: "${meta.id}"
def reference = fasta ? "--fasta ${fasta}" : "" def reference = fasta ? "--fasta ${fasta}" : ""
def interval = bed ? "--by ${bed}" : "" def interval = bed ? "--by ${bed}" : ""
if (bed && ext.args.contains("--by")) {
exit 1, "--by can only be specified once."
}
""" """
mosdepth \\ mosdepth \\