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Update tools/hisat2/main.nf

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Phil Ewels 2020-07-11 13:28:41 +02:00 committed by GitHub
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tools/hisat2/main.nf
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@ -52,9 +52,7 @@ process HISAT2 {
hisat_name = name + "_" + params.genome["name"]
"""
module load hisat2
module load samtools
hisat2 -p ${cores} ${hisat_options} -x ${index} ${splices} ${readString} 2>${hisat_name}_hisat2_stats.txt | samtools view -bS -F 4 -F 8 -F 256 -> ${hisat_name}_hisat2.bam
"""
}
}