diff --git a/.github/workflows/fastqc.yml b/.github/workflows/fastqc.yml
index 6a79746d..7f488f70 100644
--- a/.github/workflows/fastqc.yml
+++ b/.github/workflows/fastqc.yml
@@ -27,4 +27,4 @@ jobs:
         sudo mv nextflow /usr/local/bin/
 
     # Test the module
-    - run: nextflow run ./software/fastqc/test/ -with-docker
+    - run: nextflow run ./software/fastqc/test/
diff --git a/software/fastqc/test/nextflow.config b/software/fastqc/test/nextflow.config
new file mode 100644
index 00000000..83261af0
--- /dev/null
+++ b/software/fastqc/test/nextflow.config
@@ -0,0 +1,2 @@
+
+docker.enabled = true