From 7efd46b489f198c70c2d2a30cd08ea7b948cad1d Mon Sep 17 00:00:00 2001
From: drpatelh <drhpatel@gmail.com>
Date: Fri, 7 Aug 2020 09:59:19 +0100
Subject: [PATCH] Add nextflow.config

---
 .github/workflows/fastqc.yml         | 2 +-
 software/fastqc/test/nextflow.config | 2 ++
 2 files changed, 3 insertions(+), 1 deletion(-)
 create mode 100644 software/fastqc/test/nextflow.config

diff --git a/.github/workflows/fastqc.yml b/.github/workflows/fastqc.yml
index 6a79746d..7f488f70 100644
--- a/.github/workflows/fastqc.yml
+++ b/.github/workflows/fastqc.yml
@@ -27,4 +27,4 @@ jobs:
         sudo mv nextflow /usr/local/bin/
 
     # Test the module
-    - run: nextflow run ./software/fastqc/test/ -with-docker
+    - run: nextflow run ./software/fastqc/test/
diff --git a/software/fastqc/test/nextflow.config b/software/fastqc/test/nextflow.config
new file mode 100644
index 00000000..83261af0
--- /dev/null
+++ b/software/fastqc/test/nextflow.config
@@ -0,0 +1,2 @@
+
+docker.enabled = true