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Merge pull request #52 from drpatelh/master

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Why isn't GitHub API refreshing with these changes?!
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Harshil Patel 2020-08-05 16:36:25 +01:00 committed by GitHub
commit 7f13463d0b
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8 changed files with 3 additions and 1 deletions
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.github/workflows/cutadapt.yml → .github/workflows/deprecated/cutadapt.yml vendored
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.github/workflows/fastqc.yml → .github/workflows/deprecated/fastqc.yml vendored
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.github/workflows/samtools_index.yml → .github/workflows/deprecated/samtools_index.yml vendored
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.github/workflows/samtools_sort.yml → .github/workflows/deprecated/samtools_sort.yml vendored
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.github/workflows/tcoffee.yml → .github/workflows/deprecated/tcoffee.yml vendored
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.github/workflows/trim_galore.yml → .github/workflows/deprecated/trim_galore.yml vendored
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deprecated/trim_galore/Dockerfile
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@ -2,6 +2,8 @@ FROM nfcore/base:1.7
LABEL authors="phil.ewels@scilifelab.se" \ LABEL authors="phil.ewels@scilifelab.se" \
description="Docker image for nf-core modules trimgalore" description="Docker image for nf-core modules trimgalore"
#### THIS IS A BUG
# foobar # foobar
COPY environment.yml / COPY environment.yml /
RUN conda env create -f /environment.yml && conda clean -a RUN conda env create -f /environment.yml && conda clean -a

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software/fastqc/main.nf
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@ -1,5 +1,5 @@
// Import generic module functions // Import generic module functions
include { initOptions; saveFiles; getSoftwareName } from './functions' include { initOptions; saveFiles; getSoftwareName } from './lib/functions'
process FASTQC { process FASTQC {
tag "$meta.id" tag "$meta.id"