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try to make a single test pass on GHA, passes locally
This commit is contained in:
FriederikeHanssen
parent
e67515809a
commit
7f6e5d9ab5
1 changed files with 68 additions and 68 deletions
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@ -1,15 +1,15 @@
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# - name: seqkit split2 single-end length
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# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_length -c tests/config/nextflow.config
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# tags:
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# - seqkit
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# - seqkit_split2
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# - seqkit_split2_single_end
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# - length
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# files:
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# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
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# md5sum: fb45cfec0d0d37f85abe81a0d299137e
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# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
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# md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311
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- name: seqkit split2 single-end length
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_length -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_single_end
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- length
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files:
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- path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
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md5sum: fb45cfec0d0d37f85abe81a0d299137e
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- path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
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md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311
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# - name: seqkit split2 single-end size
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@ -42,61 +42,61 @@
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# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
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# md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d
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- name: seqkit split2 paired-end length
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_paired_end
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- length
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files:
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- path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
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md5sum: fb45cfec0d0d37f85abe81a0d299137e
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- path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
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md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311
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- path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz
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md5sum: 4e9704a4a0f4bcab4900b6fcd9323d8a
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- path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz
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md5sum: da93241d0cfa84d4b806e1e102c16977
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# - name: seqkit split2 paired-end length
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# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config
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# tags:
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# - seqkit
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# - seqkit_split2
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# - seqkit_split2_paired_end
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# - length
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# files:
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# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
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# md5sum: fb45cfec0d0d37f85abe81a0d299137e
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# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
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# md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311
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# - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz
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# md5sum: 4e9704a4a0f4bcab4900b6fcd9323d8a
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# - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz
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# md5sum: da93241d0cfa84d4b806e1e102c16977
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- name: seqkit split2 paired-end size
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_size -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_paired_end
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- size
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files:
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- path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
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md5sum: e76ac276819eb862c0a931755a220b50
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- path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
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md5sum: 79eb15ff1aac645308fab188915f9edf
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- path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
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md5sum: f01fa62d34012a2e9cc48972dfe8c14c
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- path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz
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md5sum: 357bfa5b981f34d87f682aebcf5e46fe
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- path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz
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md5sum: f48f3389d2870f4934139a901e5c4bb2
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- path: output/seqkit/test.split/SRR396636_R2.part_003.fastq.gz
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md5sum: d161aa05bac2f7d1823da0479949512b
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# - name: seqkit split2 paired-end size
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# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_size -c tests/config/nextflow.config
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# tags:
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# - seqkit
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# - seqkit_split2
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# - seqkit_split2_paired_end
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# - size
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# files:
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# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
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# md5sum: e76ac276819eb862c0a931755a220b50
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# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
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# md5sum: 79eb15ff1aac645308fab188915f9edf
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# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
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# md5sum: f01fa62d34012a2e9cc48972dfe8c14c
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# - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz
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# md5sum: 357bfa5b981f34d87f682aebcf5e46fe
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# - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz
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# md5sum: f48f3389d2870f4934139a901e5c4bb2
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# - path: output/seqkit/test.split/SRR396636_R2.part_003.fastq.gz
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# md5sum: d161aa05bac2f7d1823da0479949512b
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- name: seqkit split2 paired-end part
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_part -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_paired_end
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- part
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files:
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- path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
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md5sum: c394bc973e1f0f9bda835e4a7610d2e1
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- path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
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md5sum: 152e4470b8caeed1fc1c0326f34aa4e6
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- path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
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md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d
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- path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz
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md5sum: 228aff8f1e56050967476fcad164a4fc
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- path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz
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md5sum: 41047f3df10126c0df7f8e9bfd752b83
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- path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
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md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d
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# - name: seqkit split2 paired-end part
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# command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_part -c tests/config/nextflow.config
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# tags:
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# - seqkit
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# - seqkit_split2
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# - seqkit_split2_paired_end
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# - part
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# files:
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# - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
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# md5sum: c394bc973e1f0f9bda835e4a7610d2e1
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# - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
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# md5sum: 152e4470b8caeed1fc1c0326f34aa4e6
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# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
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# md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d
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# - path: output/seqkit/test.split/SRR396636_R2.part_001.fastq.gz
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# md5sum: 228aff8f1e56050967476fcad164a4fc
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# - path: output/seqkit/test.split/SRR396636_R2.part_002.fastq.gz
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# md5sum: 41047f3df10126c0df7f8e9bfd752b83
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# - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
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# md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d
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