millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-21 18:58:16 +00:00
Code Issues Releases Packages Activity

Update Arriba to 2.3.0 (#1827)

Browse source 
* update test files md5sum

* update test files md5sum, again
This commit is contained in:
Annick Renevey 2022-06-29 14:39:13 +02:00 committed by GitHub
parent e2755cb039
commit 80746895e2
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 5 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
modules/arriba/main.nf
View file

@ -2,10 +2,10 @@ process ARRIBA {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::arriba=2.2.1" : null) conda (params.enable_conda ? "bioconda::arriba=2.3.0" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/arriba:2.2.1--hecb563c_2' : 'https://depot.galaxyproject.org/singularity/arriba:2.3.0--haa8aa89_0' :
'quay.io/biocontainers/arriba:2.2.1--hecb563c_2' }" 'quay.io/biocontainers/arriba:2.3.0--haa8aa89_0' }"
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

4
tests/modules/arriba/test.yml
View file

@ -39,7 +39,7 @@
- path: output/star/star/transcriptInfo.tab - path: output/star/star/transcriptInfo.tab
md5sum: 0c3a5adb49d15e5feff81db8e29f2e36 md5sum: 0c3a5adb49d15e5feff81db8e29f2e36
- path: output/star/test.Aligned.out.bam - path: output/star/test.Aligned.out.bam
md5sum: 4fa079d11f8938e51015e3e477fa7149 md5sum: e6f850505492f1c7d47bb1ad05fddbfd
- path: output/star/test.Log.final.out - path: output/star/test.Log.final.out
- path: output/star/test.Log.out - path: output/star/test.Log.out
- path: output/star/test.Log.progress.out - path: output/star/test.Log.progress.out
@ -51,7 +51,7 @@
- arriba - arriba
files: files:
- path: output/arriba/test.fusions.discarded.tsv - path: output/arriba/test.fusions.discarded.tsv
md5sum: cdc6cfbc75e68ce29a766f50f390274d md5sum: 445cb87a27f063e751f93498cf8d10b5
- path: output/arriba/test.fusions.tsv - path: output/arriba/test.fusions.tsv
md5sum: 7c3383f7eb6d79b84b0bd30a7ef02d70 md5sum: 7c3383f7eb6d79b84b0bd30a7ef02d70
- path: output/star/star/Genome - path: output/star/star/Genome