diff --git a/tests/modules/emboss/seqret/test.yml b/tests/modules/emboss/seqret/test.yml index f8e0d2a3..e9fddc1a 100644 --- a/tests/modules/emboss/seqret/test.yml +++ b/tests/modules/emboss/seqret/test.yml @@ -1,14 +1,41 @@ -## TODO nf-core: Please run the following command to build this file: -# nf-core modules create-test-yml emboss/seqret -- name: "emboss seqret" - command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config +- name: emboss seqret test_emboss_seqret_gb2embl + command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2embl -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config tags: - - "emboss" - # - - "emboss/seqret" - # + - emboss + - emboss/seqret files: - - path: "output/emboss/test.bam" - md5sum: e667c7caad0bc4b7ac383fd023c654fc - - path: output/emboss/versions.yml - md5sum: a01fe51bc4c6a3a6226fbf77b2c7cf3b + - path: output/emboss/test.embl + md5sum: 4810933b1b2174f7067d9afa1da8b01b + contains: ["ID NZ_CP069563;"] # Human-readable test for correct format and sequence + +- name: emboss seqret test_emboss_seqret_gb2gff + command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2gff -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config + tags: + - emboss + - emboss/seqret + files: + - path: output/emboss/test.gff + md5sum: 65720c327927edbabc63f9e76afbeb31 + contains: + - "##gff-version 3" # Human-readable test for correct format + - ">NZ_CP069563" # Human-readable test for correct sequence + +- name: emboss seqret test_emboss_seqret_gb2pir + command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2pir -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config + tags: + - emboss + - emboss/seqret + files: + - path: output/emboss/test.pir + md5sum: 49f4a28533e970aa2438d8adf55a26bb + contains: [">D1;NZ_CP069563"] # Human-readable test for correct format and sequence + +- name: emboss seqret test_emboss_seqret_gb2fasta + command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2fasta -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config + tags: + - emboss + - emboss/seqret + files: + - path: output/emboss/test.fasta + md5sum: 0694275f05780aeb0b54d46687603f44 + contains: [">NZ_CP069563"] # Human-readable test for correct format and sequence