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test(fastqc): restructure under software/fastqc

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Edmund Miller 2020-11-24 15:30:51 -06:00
parent b96f2d6a5e
commit 83539fcdf2
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2 changed files with 4 additions and 4 deletions
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4
tests/fastqc/main.nf → tests/software/fastqc/main.nf
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@ -2,8 +2,8 @@
nextflow.enable.dsl = 2 nextflow.enable.dsl = 2
include { FASTQC as FASTQC_SE } from '../../software/fastqc/main.nf' addParams( options: [ publish_dir:'test_single_end' ] ) include { FASTQC as FASTQC_SE } from '../../../software/fastqc/main.nf' addParams( options: [ publish_dir:'test_single_end' ] )
include { FASTQC as FASTQC_PE } from '../../software/fastqc/main.nf' addParams( options: [ publish_dir:'test_paired_end' ] ) include { FASTQC as FASTQC_PE } from '../../../software/fastqc/main.nf' addParams( options: [ publish_dir:'test_paired_end' ] )
/* /*
* Test with single-end data * Test with single-end data

4
tests/fastqc/test_fastqc.yml → tests/software/fastqc/test.yml
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@ -1,5 +1,5 @@
- name: Run fastqc single-end test workflow - name: Run fastqc single-end test workflow
command: nextflow run ./tests/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config
tags: tags:
- fastqc - fastqc
files: files:
@ -8,7 +8,7 @@
- path: output/test_single_end/test_fastqc.zip - path: output/test_single_end/test_fastqc.zip
- name: Run fastqc paired-end test workflow - name: Run fastqc paired-end test workflow
command: nextflow run ./tests/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config
tags: tags:
- fastqc - fastqc
files: files: