From 848ee9a215d02d80be033bfa60881700f2bd914c Mon Sep 17 00:00:00 2001 From: Aleksei Korzhenkov Date: Wed, 6 Jul 2022 13:03:08 +0300 Subject: [PATCH] Improve descriptions for modules with missing Description and keywords Co-authored-by: James A. Fellows Yates --- modules/bbmap/align/meta.yml | 3 ++- modules/bbmap/bbduk/meta.yml | 1 + modules/bbmap/bbsplit/meta.yml | 3 ++- modules/bbmap/index/meta.yml | 4 ++-- modules/bowtie/align/meta.yml | 2 ++ modules/bowtie2/align/meta.yml | 2 ++ modules/expansionhunter/meta.yml | 2 +- modules/fastani/meta.yml | 6 ++++-- modules/gatk4/gatherbqsrreports/meta.yml | 2 +- modules/samtools/ampliconclip/meta.yml | 3 +-- 10 files changed, 18 insertions(+), 10 deletions(-) diff --git a/modules/bbmap/align/meta.yml b/modules/bbmap/align/meta.yml index a4682aee..f06eb72d 100644 --- a/modules/bbmap/align/meta.yml +++ b/modules/bbmap/align/meta.yml @@ -1,9 +1,10 @@ name: bbmap_align -description: write your description here +description: Align short or PacBio reads to a reference genome using BBMap keywords: - align - map - fasta + - fastq - genome - reference tools: diff --git a/modules/bbmap/bbduk/meta.yml b/modules/bbmap/bbduk/meta.yml index 6abd3d97..d79b9d0b 100644 --- a/modules/bbmap/bbduk/meta.yml +++ b/modules/bbmap/bbduk/meta.yml @@ -4,6 +4,7 @@ keywords: - trimming - adapter trimming - quality trimming + - fastq tools: - bbmap: description: BBMap is a short read aligner, as well as various other bioinformatic tools. diff --git a/modules/bbmap/bbsplit/meta.yml b/modules/bbmap/bbsplit/meta.yml index 9d9f10da..2b9ab8cb 100644 --- a/modules/bbmap/bbsplit/meta.yml +++ b/modules/bbmap/bbsplit/meta.yml @@ -1,8 +1,9 @@ name: bbmap_bbsplit -description: write your description here +description: Split sequencing reads by mapping them to multiple references simultaneously keywords: - align - map + - fastq - genome - reference tools: diff --git a/modules/bbmap/index/meta.yml b/modules/bbmap/index/meta.yml index e8b455ed..36d6181d 100644 --- a/modules/bbmap/index/meta.yml +++ b/modules/bbmap/index/meta.yml @@ -1,7 +1,7 @@ name: bbmap_index -description: This module calls bbmap.sh to create an index from a fasta file, ready to be used by bbmap.sh in mapping mode. +description: Creates an index from a fasta file, ready to be used by bbmap.sh in mapping mode. keywords: - - mapping + - map - index - fasta tools: diff --git a/modules/bowtie/align/meta.yml b/modules/bowtie/align/meta.yml index f5145b5a..0d925009 100644 --- a/modules/bowtie/align/meta.yml +++ b/modules/bowtie/align/meta.yml @@ -2,6 +2,8 @@ name: bowtie_align description: Align reads to a reference genome using bowtie keywords: - align + - map + - fastq - fasta - genome - reference diff --git a/modules/bowtie2/align/meta.yml b/modules/bowtie2/align/meta.yml index c99fa4e3..42ba0f96 100644 --- a/modules/bowtie2/align/meta.yml +++ b/modules/bowtie2/align/meta.yml @@ -2,7 +2,9 @@ name: bowtie2_align description: Align reads to a reference genome using bowtie2 keywords: - align + - map - fasta + - fastq - genome - reference tools: diff --git a/modules/expansionhunter/meta.yml b/modules/expansionhunter/meta.yml index 3483c0db..c5a89c10 100644 --- a/modules/expansionhunter/meta.yml +++ b/modules/expansionhunter/meta.yml @@ -1,5 +1,5 @@ name: expansionhunter -description: write your description here +description: Estimate repeat sizes using NGS data keywords: - STR - repeat_expansions diff --git a/modules/fastani/meta.yml b/modules/fastani/meta.yml index 2a997716..81df6fd5 100644 --- a/modules/fastani/meta.yml +++ b/modules/fastani/meta.yml @@ -1,7 +1,9 @@ name: fastani -description: write your description here +description: Alignment-free computation of average nucleotide Identity (ANI) keywords: - - fastani + - genome + - fasta + - ANI tools: - fastani: description: FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). diff --git a/modules/gatk4/gatherbqsrreports/meta.yml b/modules/gatk4/gatherbqsrreports/meta.yml index 99e74951..efd72e10 100644 --- a/modules/gatk4/gatherbqsrreports/meta.yml +++ b/modules/gatk4/gatherbqsrreports/meta.yml @@ -1,5 +1,5 @@ name: gatk4_gatherbqsrreports -description: write your description here +description: Gathers scattered BQSR recalibration reports into a single file keywords: - gatk4 - gatk4_gatherbqsrreports diff --git a/modules/samtools/ampliconclip/meta.yml b/modules/samtools/ampliconclip/meta.yml index 1107cbcd..8abc5846 100644 --- a/modules/samtools/ampliconclip/meta.yml +++ b/modules/samtools/ampliconclip/meta.yml @@ -1,10 +1,9 @@ name: samtools_ampliconclip -description: write your description here +description: Clips read alignments where they match BED file defined regions keywords: - amplicon - clipping - ampliconclip - - samtools ampliconclip - samtools tools: - samtools: