Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

modules/antismash/antismashlite/meta.yml

@@ -48,7 +48,7 @@ input:
         be done in immutable docker/singularity containers. Therefore, a local installation
         directory needs to be mounted (including all modified files from the downloading step)
         to the container as a workaround.
-      pattern: "*"
+      pattern: "*/"
   - gff:
       type: file
       pattern: "*.gff"
@@ -89,11 +89,11 @@ output:
       pattern: "svg/knownclusterblast*.svg"
   - gbk_input:
       type: file
-      description: Nucleotide sequence + annotations in GenBank format; converted from input file
+      description: Nucleotide sequence and annotations in GenBank format; converted from input file
       pattern: "*.gbk"
   - json_results:
       type: file
-      description: Nucleotide sequence + annotations in JSON format; converted from GenBank file (gbk_input)
+      description: Nucleotide sequence and annotations in JSON format; converted from GenBank file (gbk_input)
       pattern: "*.json"
   - log:
       type: file
@@ -105,7 +105,7 @@ output:
       pattern: "*.zip"
   - gbk_results:
       type: file
-      description: Nucleotide sequence + annotations in GenBank format; one file per antiSMASH hit
+      description: Nucleotide sequence and annotations in GenBank format; one file per antiSMASH hit
       pattern: "*region*.gbk"
   - clusterblastoutput:
       type: file

tests/modules/antismash/antismashlite/main.nf

@@ -21,26 +21,26 @@ workflow test_antismashlite {
         file(params.test_data['bacteroides_fragilis']['genome']['genome_gff_gz'], checkIfExists: true)
     ]
 
-    antismash_db1 = [
+    antismash_css = [
         [],
         file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/css.tar.gz', checkIfExists: true)
     ]
 
-    antismash_db2 = [
+    antismash_detection = [
         [],
         file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/detection.tar.gz', checkIfExists: true)
     ]
 
-    antismash_db3 = [
+    antismash_modules = [
         [],
         file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/modules.tar.gz', checkIfExists: true)
     ]
 
     GUNZIP1 ( genome_fna )
     GUNZIP2 ( genome_gff )
-    UNTAR1 ( antismash_db1 )
-    UNTAR2 ( antismash_db2 )
-    UNTAR3 ( antismash_db3 )
+    UNTAR1 ( antismash_css )
+    UNTAR2 ( antismash_detection )
+    UNTAR3 ( antismash_modules )
     ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES ( UNTAR1.out.untar.map{ it[1] },  UNTAR2.out.untar.map{ it[1] }, UNTAR3.out.untar.map{ it[1] } )
     ANTISMASH_ANTISMASHLITE ( GUNZIP1.out.gunzip, ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES.out.database, ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES.out.antismash_dir, GUNZIP2.out.gunzip.map{ it[1] } )
 }