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ci(trimgalore): Use pytest-workflow

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Edmund Miller 2020-11-24 20:57:13 -06:00
parent 2fc39e02e2
commit 86219a586b
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1 changed files with 14 additions and 8 deletions
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22
.github/workflows/software/trimgalore.yml vendored
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@ -17,14 +17,20 @@ jobs:
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: nextflow run ./software/trimgalore/test/ -profile docker
# Test the module
- run: pytest --tag trimgalore --symlink --wt 2