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ci(trimgalore): Use pytest-workflow
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1 changed files with 14 additions and 8 deletions
10
.github/workflows/software/trimgalore.yml
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10
.github/workflows/software/trimgalore.yml
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@ -17,7 +17,6 @@ jobs:
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env:
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env:
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NXF_ANSI_LOG: false
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NXF_ANSI_LOG: false
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steps:
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v2
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- name: Install Nextflow
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- name: Install Nextflow
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@ -26,5 +25,12 @@ jobs:
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wget -qO- get.nextflow.io | bash
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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sudo mv nextflow /usr/local/bin/
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- name: Set up Python
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uses: actions/setup-python@v2
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with:
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python-version: "3.x"
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- name: Install dependencies
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run: python -m pip install --upgrade pip pytest-workflow
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# Test the module
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# Test the module
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- run: nextflow run ./software/trimgalore/test/ -profile docker
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- run: pytest --tag trimgalore --symlink --wt 2
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