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Implement publish_results parameter

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This commit is contained in:
Gregor Sturm 2020-07-15 10:55:52 +02:00
parent 1dc47e7cd3
commit 86d6daf9de
1 changed files with 8 additions and 3 deletions
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11
software/fastqc/main.nf
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@ -1,6 +1,7 @@
nextflow.preview.dsl = 2 nextflow.preview.dsl = 2
def MODULE = "fastqc" def MODULE = "fastqc"
params.fastqc_publish_dir = "${params.out_dir}/$MODULE" params.publish_dir = MODULE
params.publish_results = "default"
process FASTQC { process FASTQC {
input: input:
@ -11,10 +12,14 @@ process FASTQC {
path "*.zip", emit: report // e.g. for MultiQC later path "*.zip", emit: report // e.g. for MultiQC later
path "*.version.txt", emit: version path "*.version.txt", emit: version
container "docker.pkg.github.com/nf-core/$module" container "docker.pkg.github.com/nf-core/$MODULE"
conda "${moduleDir}/environment.yml" conda "${moduleDir}/environment.yml"
publishDir "${params.fastqc_publish_dir}/$name", mode: params.publish_dir_mode publishDir "${params.out_dir}/${params.publish_dir}/$name",
mode: params.publish_dir_mode,
saveAs: { filename ->
if(params.publish_results == "none") null
else filename }
script: script:
""" """