millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

Seqkit/split2 test path update (#372)

Browse source 
* Update test path

* Fix bracket

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
FriederikeHanssen 2021-03-24 17:05:43 +01:00 committed by GitHub
parent c7155d023e
commit 86df111707
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 9 additions and 6 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

15
tests/software/seqkit/split2/main.nf
View file

@ -8,7 +8,7 @@ include { SEQKIT_SPLIT2 as SEQKIT_SPLIT2_PART } from '../../../../software/seq
workflow test_seqkit_split2_single_end_length {
input = [ [ id:'test', single_end:true ], // meta map
file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_1.fastq.gz", checkIfExists: true)
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
]
SEQKIT_SPLIT2_LENGTH ( input )
@ -16,7 +16,7 @@ workflow test_seqkit_split2_single_end_length {
workflow test_seqkit_split2_single_end_size {
input = [ [ id:'test', single_end:true ], // meta map
file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_1.fastq.gz", checkIfExists: true)
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
]
SEQKIT_SPLIT2_SIZE ( input )
@ -24,7 +24,7 @@ workflow test_seqkit_split2_single_end_size {
workflow test_seqkit_split2_single_end_part {
input = [ [ id:'test', single_end:true ], // meta map
file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_1.fastq.gz", checkIfExists: true)
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
]
SEQKIT_SPLIT2_PART ( input )
@ -32,7 +32,8 @@ workflow test_seqkit_split2_single_end_part {
workflow test_seqkit_split2_paired_end_length {
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_[1-2].fastq.gz", checkIfExists: true)
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
]
SEQKIT_SPLIT2_LENGTH ( input )
@ -40,7 +41,8 @@ workflow test_seqkit_split2_paired_end_length {
workflow test_seqkit_split2_paired_end_size {
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}//tests/data/genomics/sarscov2/illumina/fastq/test_[1-2].fastq.gz", checkIfExists: true)
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
]
SEQKIT_SPLIT2_SIZE ( input )
@ -48,7 +50,8 @@ workflow test_seqkit_split2_paired_end_size {
workflow test_seqkit_split2_paired_end_part {
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}//tests/data/genomics/sarscov2/illumina/fastq/test_[1-2].fastq.gz", checkIfExists: true)
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
]
SEQKIT_SPLIT2_PART ( input )