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Make mpileup saving optional

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Anders Goncalves da Silva 2021-02-10 10:00:22 -08:00 committed by GitHub
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commit 884c4658b8
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software/ivar/consensus/main.nf
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@ -36,7 +36,7 @@ process IVAR_CONSENSUS {
-aa -A -d 0 -Q 0 \\
$options.args2 \\
$bam | \\
tee ${prefix}_mpileup.txt | \\
$save_mpileup \\
ivar consensus \\
$options.args \\
-p $prefix