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recovering old module name
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3 changed files with 61 additions and 1 deletions
30
modules/krona/kronadb/main.nf
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30
modules/krona/kronadb/main.nf
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def VERSION='2.7.1' // Version information not provided by tool on CLI
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process KRONA_KTUPDATETAXONOMY {
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label 'process_low'
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conda (params.enable_conda ? "bioconda::krona=2.7.1" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/krona:2.7.1--pl526_5' :
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'quay.io/biocontainers/krona:2.7.1--pl526_5' }"
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output:
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path 'taxonomy/taxonomy.tab', emit: db
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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"""
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ktUpdateTaxonomy.sh \\
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$args \\
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taxonomy/
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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krona: $VERSION
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END_VERSIONS
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"""
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}
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30
modules/krona/kronadb/meta.yml
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modules/krona/kronadb/meta.yml
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name: krona_kronadb
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description: KronaTools Update Taxonomy downloads a taxonomy database
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keywords:
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- database
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- taxonomy
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- krona
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tools:
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- krona:
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description: Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.
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homepage: https://github.com/marbl/Krona/wiki/KronaTools
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documentation: https://github.com/marbl/Krona/wiki/Installing
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tool_dev_url:
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doi: https://doi.org/10.1186/1471-2105-12-385
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licence:
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input:
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- none: There is no input. This module downloads a pre-built taxonomy database for use with Krona Tools.
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- db:
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type: file
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description: A TAB separated file that contains a taxonomy database.
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pattern: "*.{tab}"
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authors:
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- "@mjakobs"
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@ -1,4 +1,4 @@
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name: krona_kronadb
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name: krona_ktupdatetaxonomy
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description: KronaTools Update Taxonomy downloads a taxonomy database
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keywords:
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- database
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