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Fixed the issue with the BED file

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This commit is contained in:
Nicolas Vannieuwkerke 2022-04-28 14:07:55 +02:00
parent 45b4a61a15
commit 8c98a78d2a
2 changed files with 2 additions and 1 deletions
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1
modules/vardictjava/main.nf
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@ -26,6 +26,7 @@ process VARDICTJAVA {
""" """
vardict-java \\ vardict-java \\
$args \\ $args \\
-c 1 -S 2 -E 3 \\
-b $bam \\ -b $bam \\
-th $task.cpus \\ -th $task.cpus \\
-N $prefix \\ -N $prefix \\

2
tests/modules/vardictjava/test.yml
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@ -4,6 +4,6 @@
- vardictjava - vardictjava
files: files:
- path: output/vardictjava/test.vcf.gz - path: output/vardictjava/test.vcf.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a md5sum: 2179dcaee6183495b421293f42db11b5
- path: output/vardictjava/versions.yml - path: output/vardictjava/versions.yml
md5sum: aac455b8c9c9194c5fed80e4fd495b96 md5sum: aac455b8c9c9194c5fed80e4fd495b96