Multiqc sep logo (#2028)

* Separate MultiQC config from logo input channel

* Update meta.yml

* Update main.nf

* Add test for new check

* md5sum -> contains

* Remove logo input channel from MultiQC

modules/multiqc/main.nf

@@ -9,7 +9,6 @@ process MULTIQC {
     input:
     path  multiqc_files, stageAs: "?/*"
     path(multiqc_config)
-    path(multiqc_logo)
 
     output:
     path "*multiqc_report.html", emit: report

modules/multiqc/meta.yml

@@ -12,6 +12,7 @@ tools:
       homepage: https://multiqc.info/
       documentation: https://multiqc.info/docs/
       licence: ["GPL-3.0-or-later"]
+
 input:
   - multiqc_files:
       type: file
@@ -21,10 +22,7 @@ input:
       type: file
       description: Optional config yml for MultiQC
       pattern: "*.{yml,yaml}"
-  - multiqc_logo:
+
-      type: file
-      description: Optional logo file for MultiQC
-      pattern: "*.{png}"
 output:
   - report:
       type: file
@@ -46,3 +44,4 @@ authors:
   - "@abhi18av"
   - "@bunop"
   - "@drpatelh"
+  - "@jfy133"

tests/modules/multiqc/main.nf

@@ -13,7 +13,7 @@ workflow test_multiqc {
     ]
 
     FASTQC  ( input )
-    MULTIQC ( FASTQC.out.zip.collect { it[1] }, [],[] )
+    MULTIQC ( FASTQC.out.zip.collect { it[1] }, [] )
 }
 
 workflow test_multiqc_fn_collision {
@@ -29,7 +29,7 @@ workflow test_multiqc_fn_collision {
     FASTQC2  ( fqc_input )
     mqc_input = mqc_input.mix(FASTQC2.out.zip.collect { it[1] })
 
-    MULTIQC ( mqc_input, [],[] )
+    MULTIQC ( mqc_input, [] )
 }
 
 workflow test_multiqc_config {
@@ -41,5 +41,5 @@ workflow test_multiqc_config {
     mqc_input = Channel.empty()
 
     FASTQC  ( input )
-    MULTIQC ( FASTQC.out.zip.collect { it[1] }, mqc_config,[] )
+    MULTIQC ( FASTQC.out.zip.collect { it[1] }, mqc_config )
 }