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fixed yml formatting

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This commit is contained in:
kevinmenden 2020-12-17 07:39:34 +01:00
parent d75cb75111
commit 8d3fc30eb3
2 changed files with 36 additions and 37 deletions
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6
.github/workflows/bowtie_align.yml vendored
View file

@ -26,10 +26,10 @@ jobs:
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.nxf_version }}
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2

67
.github/workflows/bowtie_index.yml vendored
View file

@ -1,41 +1,40 @@
name: bowtie_index
on:
push:
paths:
- software/bowtie/index/**
- .github/workflows/bowtie_index.yml
- tests/software/bowtie/**
pull_request:
paths:
- software/bowtie/index/**
- .github/workflows/bowtie_index.yml
- tests/software/bowtie/**
push:
paths:
- software/bowtie/index/**
- .github/workflows/bowtie_index.yml
- tests/software/bowtie/**
pull_request:
paths:
- software/bowtie/index/**
- .github/workflows/bowtie_index.yml
- tests/software/bowtie/**
jobs:
ci_test:
runs-on: ubuntu-latest
strategy:
matrix:
nxf_version: [20.11.0-edge]
ci_test:
runs-on: ubuntu-latest
strategy:
matrix:
nxf_version: [20.11.0-edge]
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag bowtie_index --symlink --wt 2
# Test the module
- run: pytest --tag bowtie_index --symlink --wt 2