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fixed yml formatting

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This commit is contained in:
kevinmenden 2020-12-17 07:39:34 +01:00
parent d75cb75111
commit 8d3fc30eb3
2 changed files with 36 additions and 37 deletions
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6
.github/workflows/bowtie_align.yml vendored
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@ -26,10 +26,10 @@ jobs:
- name: Install Nextflow - name: Install Nextflow
env: env:
NXF_VER: ${{ matrix.nxf_version }} NXF_VER: ${{ matrix.nxf_version }}
run: | run: |
wget -qO- get.nextflow.io | bash wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
- name: Set up Python - name: Set up Python
uses: actions/setup-python@v2 uses: actions/setup-python@v2

67
.github/workflows/bowtie_index.yml vendored
View file

@ -1,41 +1,40 @@
name: bowtie_index name: bowtie_index
on: on:
push: push:
paths: paths:
- software/bowtie/index/** - software/bowtie/index/**
- .github/workflows/bowtie_index.yml - .github/workflows/bowtie_index.yml
- tests/software/bowtie/** - tests/software/bowtie/**
pull_request: pull_request:
paths: paths:
- software/bowtie/index/** - software/bowtie/index/**
- .github/workflows/bowtie_index.yml - .github/workflows/bowtie_index.yml
- tests/software/bowtie/** - tests/software/bowtie/**
jobs: jobs:
ci_test: ci_test:
runs-on: ubuntu-latest runs-on: ubuntu-latest
strategy: strategy:
matrix: matrix:
nxf_version: [20.11.0-edge] nxf_version: [20.11.0-edge]
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
env: env:
NXF_ANSI_LOG: false NXF_VER: ${{ matrix.nxf_version }}
steps: run: |
- uses: actions/checkout@v2 wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Install Nextflow - name: Set up Python
env: uses: actions/setup-python@v2
NXF_VER: ${{ matrix.nxf_version }} with:
run: | python-version: "3.x"
wget -qO- get.nextflow.io | bash - name: Install dependencies
sudo mv nextflow /usr/local/bin/ run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- name: Set up Python - run: pytest --tag bowtie_index --symlink --wt 2
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag bowtie_index --symlink --wt 2