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Update tests/modules/motus/profile/main.nf

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James A. Fellows Yates 2022-05-12 20:08:37 +01:00 committed by GitHub
parent 6b960f0e75
commit 8dd711aba2
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1 changed files with 0 additions and 24 deletions
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tests/modules/motus/profile/main.nf
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@ -17,27 +17,3 @@ workflow test_motus_profile_single_end {
MOTUS_PROFILE ( input, MOTUS_DOWNLOADDB.out.db )
}
workflow test_motus_profile_paired_end {
input = [
[ id:'test', single_end:false ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
]
MOTUS_DOWNLOADDB(file('https://raw.githubusercontent.com/motu-tool/mOTUs/master/motus/downloadDB.py'))
MOTUS_PROFILE ( input, MOTUS_DOWNLOADDB.out.db)
}
workflow test_motus_profile_bam {
input = [
[ id:'test', single_end:false ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ]
]
MOTUS_DOWNLOADDB(file('https://raw.githubusercontent.com/motu-tool/mOTUs/master/motus/downloadDB.py'))
MOTUS_PROFILE ( input, MOTUS_DOWNLOADDB.out.db)
}