millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-10 20:23:10 +00:00
Code Issues Releases Packages Activity

Apply suggestions from code review

Browse source 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Kevin Menden 2021-01-26 12:46:30 +01:00 committed by GitHub
parent 5be1598b29
commit 8e2749beb7
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
software/star/align/main.nf
View file

@ -25,7 +25,7 @@ process STAR_ALIGN {
path gtf
output:
tuple val(meta), path('*d.out.bam') , emit: bam
tuple val(meta), path('*d.out.bam') , emit: bam
tuple val(meta), path('*Log.final.out') , emit: log_final
tuple val(meta), path('*Log.out') , emit: log_out
tuple val(meta), path('*Log.progress.out'), emit: log_progress
@ -33,7 +33,7 @@ process STAR_ALIGN {
tuple val(meta), path('*sortedByCoord.out.bam') , optional:true, emit: bam_sorted
tuple val(meta), path('*toTranscriptome.out.bam'), optional:true, emit: bam_transcript
tuple val(meta), path('*Aligned.unsort.out.bam'), optional:true, emit: bam_unsorted
tuple val(meta), path('*Aligned.unsort.out.bam') , optional:true, emit: bam_unsorted
tuple val(meta), path('*fastq.gz') , optional:true, emit: fastq
tuple val(meta), path('*.tab') , optional:true, emit: tab
@ -55,7 +55,7 @@ process STAR_ALIGN {
$seq_center \\
$options.args
${mv_unsorted_bam}
$mv_unsorted_bam
if [ -f ${prefix}.Unmapped.out.mate1 ]; then
mv ${prefix}.Unmapped.out.mate1 ${prefix}.unmapped_1.fastq