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remove singulairty container
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1 changed files with 1 additions and 3 deletions
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@ -3,9 +3,7 @@ process GATK4_MARKDUPLICATES_SPARK {
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label 'process_high'
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conda (params.enable_conda ? "bioconda::gatk4=4.2.6.1 conda-forge::openjdk=8.0.312" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/gatk4:4.2.6.1--hdfd78af_0':
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'broadinstitute/gatk:4.2.6.1' }"
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container 'broadinstitute/gatk:4.2.6.1'
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input:
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tuple val(meta), path(bam)
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