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remove singulairty container

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This commit is contained in:
Rike 2022-06-09 15:16:11 +02:00
parent 89a6a03e38
commit 8e8f4c9c51
1 changed files with 1 additions and 3 deletions
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4
modules/gatk4/markduplicatesspark/main.nf
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@ -3,9 +3,7 @@ process GATK4_MARKDUPLICATES_SPARK {
label 'process_high'
conda (params.enable_conda ? "bioconda::gatk4=4.2.6.1 conda-forge::openjdk=8.0.312" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/gatk4:4.2.6.1--hdfd78af_0':
'broadinstitute/gatk:4.2.6.1' }"
container 'broadinstitute/gatk:4.2.6.1'
input:
tuple val(meta), path(bam)