From 8e9d6cd5e43ff1f4bd8314f52e989d7b2c92625f Mon Sep 17 00:00:00 2001 From: "Robert A. Petit III" Date: Tue, 21 Sep 2021 13:28:53 -0600 Subject: [PATCH] Update agrvate to latest version (#728) The new version of agrvate fixes an issue where sample names with a `.` (dot) in there names caused the name to be truncated https://github.com/VishnuRaghuram94/AgrVATE/releases/tag/v1.0.1 Co-authored-by: Harshil Patel --- modules/agrvate/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/agrvate/main.nf b/modules/agrvate/main.nf index bbbd9fa0..8f504927 100644 --- a/modules/agrvate/main.nf +++ b/modules/agrvate/main.nf @@ -11,11 +11,11 @@ process AGRVATE { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::agrvate=1.0" : null) + conda (params.enable_conda ? "bioconda::agrvate=1.0.1" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/agrvate:1.0--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/agrvate:1.0.1--hdfd78af_0" } else { - container "quay.io/biocontainers/agrvate:1.0--hdfd78af_0" + container "quay.io/biocontainers/agrvate:1.0.1--hdfd78af_0" } input: