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command: nextflow run ./tests/software/gatk4/samtofastq -entry test_gatk4_samtofastq_single_end -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4_samtofastq
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- gatk4_samtofastq_single_end
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files:
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- path: output/gatk4/test.fastq.gz
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command: nextflow run ./tests/software/gatk4/samtofastq -entry test_gatk4_samtofastq_paired_end -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4_samtofastq
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- gatk4_samtofastq_paired_end
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files:
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- path: output/gatk4/test_1.fastq.gz
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