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Update ivar consensus
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@ -34,7 +34,7 @@ process IVAR_CONSENSUS {
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def save_mpileup = params.save_mpileup ? "tee ${prefix}.mpileup |" : ""
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"""
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samtools mpileup \\
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--fasta-ref $fasta \\
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--reference $fasta \\
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$options.args2 \\
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$bam | \\
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$save_mpileup \\
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