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Remove samtools option

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Anders Goncalves da Silva 2021-02-12 15:09:50 -08:00 committed by GitHub
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commit 9268851cde
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software/ivar/consensus/main.nf
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@ -35,7 +35,6 @@ process IVAR_CONSENSUS {
"""
samtools mpileup \\
--fasta-ref $fasta \\
-aa \\
$options.args2 \\
$bam | \\
$save_mpileup \\