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Changes after code review

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This commit is contained in:
James Fellows Yates 2022-06-09 08:26:04 +02:00
parent 4d7afa21e2
commit 939653a47e
2 changed files with 5 additions and 5 deletions
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2
modules/gatk/indelrealigner/main.nf
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@ -8,7 +8,7 @@ process GATK_INDELREALIGNER {
'quay.io/biocontainers/gatk:3.5--hdfd78af_11' }"
input:
tuple val(meta), path(input), path(index), path(intervals)
tuple val(meta), path(bam), path(bai), path(intervals)
path(fasta)
path(fai)
path(dict)

8
modules/gatk/indelrealigner/meta.yml
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@ -19,11 +19,11 @@ input:
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- input:
- bam:
type: file
description: Sorted and indexed BAM/CRAM/SAM file
description: Sorted and indexed BAM file
pattern: "*.bam"
- index:
- bai:
type: file
description: BAM index file
pattern: "*.bai"
@ -60,7 +60,7 @@ output:
pattern: "versions.yml"
- bam:
type: file
description: Sorted and indexed BAM/CRAM/SAM file with local realignment around variants
description: Sorted and indexed BAM file with local realignment around variants
pattern: "*.bam"
- bai:
type: file