diff --git a/.github/filters.yml b/.github/filters.yml index 40dce47b..6a485e8c 100644 --- a/.github/filters.yml +++ b/.github/filters.yml @@ -147,24 +147,24 @@ ucsc_bedgraphtobigwig: bedtools_complement: - software/bedtools/complement/** - - tests/software/bedtools/complement** + - tests/software/bedtools/complement/** bedtools_genomecov: - software/bedtools/genomecov/** - - tests/software/bedtools/** + - tests/software/bedtools/genomecov/** bedtools_intersect: - software/bedtools/intersect/** - - tests/software/bedtools/** + - tests/software/bedtools/intersect/** bedtools_merge: - software/bedtools/merge/** - - tests/software/bedtools/** + - tests/software/bedtools/merge/** bedtools_slop: - software/bedtools/slop/** - - tests/software/bedtools/** + - tests/software/bedtools/slop/** bedtools_sort: - software/bedtools/sort/** - - tests/software/bedtools/** + - tests/software/bedtools/sort/** diff --git a/tests/software/bedtools/genomecov/test.yml b/tests/software/bedtools/genomecov/test.yml index ffa3f034..c222d5e4 100644 --- a/tests/software/bedtools/genomecov/test.yml +++ b/tests/software/bedtools/genomecov/test.yml @@ -5,4 +5,4 @@ - bedtools_genomecov files: - path: output/bedtools/test.bed - md5sum: cc1bb317886e7df0a942b56f8a320d9c + md5sum: 8c8238ca3cdac7a0e650ade95ee941f4 diff --git a/tests/software/bedtools/slop/main.nf b/tests/software/bedtools/slop/main.nf index 37487e4b..043e9de5 100644 --- a/tests/software/bedtools/slop/main.nf +++ b/tests/software/bedtools/slop/main.nf @@ -4,12 +4,12 @@ nextflow.enable.dsl = 2 include { BEDTOOLS_SLOP } from '../../../../software/bedtools/slop/main.nf' addParams( options: [args: '-l 15 r 30'] ) - workflow test_bedtools_slop { def input = [] input = [ [ id:'test'], - file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ] + file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true), + file("${launchDir}/tests/data/bed/genome.sizes", checkIfExists: true) ] BEDTOOLS_SLOP( input ) - } + diff --git a/tests/software/bedtools/slop/test.yml b/tests/software/bedtools/slop/test.yml index c398ba3c..d6773167 100644 --- a/tests/software/bedtools/slop/test.yml +++ b/tests/software/bedtools/slop/test.yml @@ -2,7 +2,7 @@ command: nextflow run ./tests/software/bedtools/slop -entry test_bedtools_slop -c tests/config/nextflow.config tags: - bedtools - - bedtools_complement + - bedtools_slop files: - path: output/bedtools/test.slop.bed md5sum: 55a43973abb1a08ac57290ff44f6c502