From 93e414635b61725436683752d2db6bc49a10e6d6 Mon Sep 17 00:00:00 2001
From: sruthipsuresh <sruthiprabhasuresh@gmail.com>
Date: Fri, 29 Jan 2021 21:57:24 -0600
Subject: [PATCH] Fixed md5sum, fixed filters, fixed slop input

---
 .github/filters.yml                        | 12 ++++++------
 tests/software/bedtools/genomecov/test.yml |  2 +-
 tests/software/bedtools/slop/main.nf       |  6 +++---
 tests/software/bedtools/slop/test.yml      |  2 +-
 4 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/.github/filters.yml b/.github/filters.yml
index 40dce47b..6a485e8c 100644
--- a/.github/filters.yml
+++ b/.github/filters.yml
@@ -147,24 +147,24 @@ ucsc_bedgraphtobigwig:
 
 bedtools_complement:
   - software/bedtools/complement/**
-  - tests/software/bedtools/complement**
+  - tests/software/bedtools/complement/**
 
 bedtools_genomecov:
   - software/bedtools/genomecov/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/genomecov/**
 
 bedtools_intersect:
   - software/bedtools/intersect/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/intersect/**
 
 bedtools_merge:
   - software/bedtools/merge/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/merge/**
 
 bedtools_slop:
   - software/bedtools/slop/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/slop/**
 
 bedtools_sort:
   - software/bedtools/sort/**
-  - tests/software/bedtools/**
+  - tests/software/bedtools/sort/**
diff --git a/tests/software/bedtools/genomecov/test.yml b/tests/software/bedtools/genomecov/test.yml
index ffa3f034..c222d5e4 100644
--- a/tests/software/bedtools/genomecov/test.yml
+++ b/tests/software/bedtools/genomecov/test.yml
@@ -5,4 +5,4 @@
     - bedtools_genomecov
   files:
     - path: output/bedtools/test.bed
-      md5sum: cc1bb317886e7df0a942b56f8a320d9c
+      md5sum: 8c8238ca3cdac7a0e650ade95ee941f4
diff --git a/tests/software/bedtools/slop/main.nf b/tests/software/bedtools/slop/main.nf
index 37487e4b..043e9de5 100644
--- a/tests/software/bedtools/slop/main.nf
+++ b/tests/software/bedtools/slop/main.nf
@@ -4,12 +4,12 @@ nextflow.enable.dsl = 2
 
 include { BEDTOOLS_SLOP } from '../../../../software/bedtools/slop/main.nf' addParams( options: [args: '-l 15 r 30'] )
 
-
 workflow test_bedtools_slop {
     def input = []
     input = [ [ id:'test'],
-              file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ]
+              file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true),
+              file("${launchDir}/tests/data/bed/genome.sizes", checkIfExists: true) ]
 
     BEDTOOLS_SLOP( input )
-
 }
+
diff --git a/tests/software/bedtools/slop/test.yml b/tests/software/bedtools/slop/test.yml
index c398ba3c..d6773167 100644
--- a/tests/software/bedtools/slop/test.yml
+++ b/tests/software/bedtools/slop/test.yml
@@ -2,7 +2,7 @@
   command: nextflow run ./tests/software/bedtools/slop -entry test_bedtools_slop -c tests/config/nextflow.config
   tags:
     - bedtools
-    - bedtools_complement
+    - bedtools_slop
   files:
     - path: output/bedtools/test.slop.bed
       md5sum: 55a43973abb1a08ac57290ff44f6c502