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Still fixing linting

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FelixKrueger 2020-07-16 09:06:59 +01:00
parent c6f73f9d56
commit 9402a2efbe
2 changed files with 2 additions and 2 deletions
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tests/data/fastq/methylated_dna/bisulfite-seq_test_data.md
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@ -17,7 +17,7 @@ A test alignment should look roughly like this:
`bismark --genome /bi/scratch/Genomes/E_coli/ -1 Ecoli_10K_methylated_R1.fastq.gz -2 Ecoli_10K_methylated_R2.fastq.gz --non_dir` `bismark --genome /bi/scratch/Genomes/E_coli/ -1 Ecoli_10K_methylated_R1.fastq.gz -2 Ecoli_10K_methylated_R2.fastq.gz --non_dir`
``` ``` csv
Bismark report for: Ecoli_10K_methylated_R1.fastq.gz and Ecoli_10K_methylated_R2.fastq.gz (version: v0.22.3) Bismark report for: Ecoli_10K_methylated_R1.fastq.gz and Ecoli_10K_methylated_R2.fastq.gz (version: v0.22.3)
Bismark was run with Bowtie 2 against the bisulfite genome of /bi/scratch/Genomes/E_coli/ with the specified options: -q --score-min L,0,-0.2 --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Bismark was run with Bowtie 2 against the bisulfite genome of /bi/scratch/Genomes/E_coli/ with the specified options: -q --score-min L,0,-0.2 --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Option '--non_directional' specified: alignments to all strands were being performed (OT, OB, CTOT, CTOB) Option '--non_directional' specified: alignments to all strands were being performed (OT, OB, CTOT, CTOB)

2
tests/data/fastq/rna/paired_end_RNAseq_test_data.md
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@ -1,4 +1,4 @@
### Paired-end RNA-seq test dataset # Paired-end RNA-seq test dataset
The data here are 2x 76bp RNA-seq data from mouse (10,000 reads of paired-end data). The files can be found in the folder: genaral/fastq/rna, and are called: The data here are 2x 76bp RNA-seq data from mouse (10,000 reads of paired-end data). The files can be found in the folder: genaral/fastq/rna, and are called: