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Bwa index (#1040)
* fix a bug that the prefix is not handled by index. * build the test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2 changed files with 12 additions and 12 deletions
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@ -31,8 +31,8 @@ process BWA_INDEX {
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bwa \\
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index \\
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$options.args \\
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$fasta \\
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-p bwa/${fasta.baseName}
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-p bwa/${fasta.baseName} \\
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$fasta
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cat <<-END_VERSIONS > versions.yml
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${getProcessName(task.process)}:
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@ -1,16 +1,16 @@
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- name: bwa index
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command: nextflow run ./tests/modules/bwa/index -entry test_bwa_index -c tests/config/nextflow.config
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- name: bwa index test_bwa_index
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command: nextflow run tests/modules/bwa/index -entry test_bwa_index -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa/index
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files:
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- path: ./output/bwa/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/bwa/bwa/genome.amb
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- path: output/bwa/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/bwa/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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- path: ./output/bwa/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/bwa/bwa/genome.ann
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- path: output/bwa/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: output/bwa/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: output/bwa/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: output/bwa/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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