diff --git a/tests/modules/bowtie2/align/test.yml b/tests/modules/bowtie2/align/test.yml
index 9aec709c..ef05d70d 100644
--- a/tests/modules/bowtie2/align/test.yml
+++ b/tests/modules/bowtie2/align/test.yml
@@ -10,7 +10,7 @@
     - path: output/bowtie2/versions.yml
 
 - name: bowtie2 align test_bowtie2_align_paired_end
-  command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config
+  command: nextflow run ./tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/bowtie2/align/nextflow.config
   tags:
     - bowtie2/align
     - bowtie2